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SAW count
SAW count is the central component of the software suite, compatible with most Stereo-seq FF and Stereo-seq FFPE datasets. The inputs consist of a chip mask, FASTQ files, a reference and a microscope image. So that the pipeline counts gene expression reads to generate expression matrices and analysis results from the Stereo-seq chip.
According to the STOmics product lines, parameter usage varies lightly. Before performing an analysis on SAW count, pay attention to the information regarding your assay kit version. Choose the appropriate one.
Stereo-seq T FF
*T stands for Chip T
Stereo-seq N FFPE
*N stands for Chip N
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