SAW User Manual V8.0
  • Overview
  • Getting Started
    • Introduction
    • Glossary
  • Download Center
  • Analysis
    • Inputs
      • Chip mask
      • FASTQs
      • Images
    • Pipelines
      • SAW commands
      • count
        • Stereo-seq T FF
        • Stereo-seq N FFPE
    • Outputs
      • count outputs
      • realign outputs
      • HTML report
      • BAM
      • Matrices
      • Images
      • Analysis
  • Tutorials
    • Preparation of reference
    • Stereo-seq FF
    • Stereo-seq FFPE
    • With manually processed files
    • Secondary analysis
    • Format conversion
  • Algorithms
    • Read processing algorithms
    • Image processing algorithms
  • Advanced
    • Analysis with GPU
    • Expression matrix format
    • Image-related record format
  • Release Notes
  • SUPPORT PAGES
    • Datasets
    • Troubleshooting
    • Software and Kit Compatibility
    • Q & A
    • StereoMap
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Tutorials

Last updated 8 months ago

Select a tutorial based on your kit version or analysis scenarios!

Set up SAW

Download and install SAW

SAW for Stereo-seq FF

Learn how to SAW count on fresh frozen (FF) samples

SAW for Stereo-seq FFPE

Learn how to perform SAW count on formalin-fixed paraffin-embedded (FFPE) samples

With manually processed files

Learn how to handle with manually processed images from StereoMap

SAW for Stereo-CITE FF

Coming soon ...