# Run main pipeline

<table data-view="cards"><thead><tr><th></th><th></th><th></th><th data-hidden data-card-cover data-type="image">Cover image</th></tr></thead><tbody><tr><td><a href="run-main-pipeline/stereo-seq-ff"><strong>Stereo-seq FF</strong></a></td><td>Learn how to perform SAW count on fresh frozen (FF) samples</td><td></td><td><a href="https://1692821827-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2F33hMinoADCychkEZKBYW%2Fuploads%2F3svqgHm4OuqKbprCJ4IZ%2FSAW_counf_for_FF_8.2%404x.png?alt=media&#x26;token=6b542240-0c1f-41fc-9eaa-f96cef640493">SAW_counf_for_FF_8.2@4x.png</a></td></tr><tr><td><a href="run-main-pipeline/stereo-seq-ffpe"><strong>Stereo-seq FFPE</strong></a></td><td>Learn how to perform SAW count on formalin-fixed paraffin-embedded (FFPE) samples</td><td></td><td><a href="https://1692821827-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2F33hMinoADCychkEZKBYW%2Fuploads%2FBlbREVCyPwWVlIKQgkma%2FSAW_counf_for_FFPE_8.2%404x.png?alt=media&#x26;token=70196f19-d8f2-4518-8715-ce4e52ecfd5d">SAW_counf_for_FFPE_8.2@4x.png</a></td></tr><tr><td><a href="run-main-pipeline/stereo-cite-ff"><strong>Stereo-CITE FF</strong></a></td><td>Learn how to perform SAW count on Stereo-CITE fresh frozen (FF) samples by transcriptome and multiplex protein simultaneous detection.</td><td></td><td><a href="https://1692821827-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2F33hMinoADCychkEZKBYW%2Fuploads%2Ff2nEem1reHvaXVHbloSR%2FSAW_counf_for_CITE_FF_8.2%404x.png?alt=media&#x26;token=45181991-2963-45fc-9708-8c1a62d4c83f">SAW_counf_for_CITE_FF_8.2@4x.png</a></td></tr></tbody></table>