# Bioinformatics Analysis

Learn about application features in the assay analysis.

<table data-header-hidden><thead><tr><th width="198">Solution Name</th><th>Analyses</th></tr></thead><tbody><tr><td><a href="bioinformatics-analysis/stereo-seq-t-ff"><strong>Stereo-seq T FF</strong></a></td><td><ul><li><a href="stereo-seq-t-ff#check-image-alignment">Check Image Alignment</a></li><li><a href="stereo-seq-t-ff#co-expression-of-selected-genes">Co-expression of Selected Genes</a></li><li><a href="stereo-seq-t-ff#characterize-substructure-and-generate-new-heatmap">Characterize Substructure and Generate New Heatmap</a></li><li><a href="stereo-seq-t-ff#mid-filtering">MID Filtering</a></li><li><a href="stereo-seq-t-ff#differential-expression-analysis">Differential Expression Analysis</a></li></ul></td></tr><tr><td><a href="bioinformatics-analysis/stereo-seq-n-ffpe"><strong>Stereo-seq N FFPE</strong></a></td><td><ul><li><a href="stereo-seq-n-ffpe#region-annotation-based-on-h-and-e-image">Region Annotation Based on H&#x26;E Image</a></li><li><a href="stereo-seq-n-ffpe#microorganism-and-host-genes">Microorganism and Host Genes</a></li></ul></td></tr><tr><td><a href="bioinformatics-analysis/stereo-cite-t-ff"><strong>Stereo-CITE T FF</strong></a></td><td><ul><li><a href="stereo-cite-t-ff#explore-tissue-context-through-spatial-multi-omics-data">Explore Tissue Context through Spatial Multi-omics Data</a></li><li><a href="stereo-cite-t-ff#spatial-distribution-of-protein-and-its-corresponding-marker-gene">Spatial Distribution of Protein and its Corresponding Marker Gene</a></li></ul></td></tr></tbody></table>