SAW
Stereo-seq Analysis Workflow (SAW) software suite is a set of pipelines bundled to map sequenced reads to their spatial location on the tissue section, quantify spatial feature expression, and visually present spatial expression distribution. SAW processes the data from the Stereo-seq sequencing platform, combined with microscope images, to generate spatial feature expression matrices. Analysts can use the output files as a starting point to perform downstream analysis.
SAW: An efficient and accurate data analysis workflow for Stereo-seq spatial transcriptomics. Gigabyte. https://doi.org/10.46471/gigabyte.111
Analysis
Learn about preparatory input files to run SAW
Learn about how to run SAW piprlines
Learn about output files generated from SAW
Tutorials
Learn how to perform SAW count on fresh frozen (FF) samples
Learn how to perform SAW count on formalin-fixed paraffin-embedded (FFPE) samples
Learn how to perform SAW count on Stereo-CITE fresh frozen (FF) samples by transcriptome and multiplex protein simultaneous detection.
Learn how to handle with manually processed images from StereoMap
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