Getting Started

New to SAW?

What is SAW? Stereo-seq Analysis Workflow (SAW) software suite is a set of pipelines bundled to map sequenced reads to their spatial location on the tissue section, quantify spatial feature expression, and visually present spatial expression distribution.

For further details regarding STOmics and SAW, click the title.

SAW workflow

Set up

Download software >

Installation >

Input datasets

Input overview >

Learn about pipelines

SAW commands >

SAW count >

SAW realign >

Complementary ones >

Run analysis

Stereo-seq FF >

Stereo-seq FFPE >

Stereo-CITE FF>

Manual processing >

Review outputs

Output overview >

HTML report >

Other information

Glossary >

Algorithms >

File format >

With GPU >