Datasets

Jump to the page of SAW demo datasets for more exploration. Original input files and analysis results can be obtained there.

STOmics R&D has pre-built reference genome index files that can be used directly. Download the references you need from Download Center.

"Kit version" records the input information of the SAW count --kit-version argument.

Stereo-seq T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
SS200000135TL_D1_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 5.5	Mouse	Healthy	Brain	ssDNA
FP200009107_E414_mouse_olfactory_bulb_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Mouse	Healthy	Olfactory bulb	DAPI
B01207E3G4_rat_brain_Stereo-seq_T_FF	2 cm x 3 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Rat	Healthy	Brain	ssDNA
C02533C1_mouse_kidney_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 7.0	Mouse	Healthy	Kidney	H&E
C04042E2_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	ssDNA
C04042E3_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	H&E
B04372C214_mouse_tongue_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Tongue	H&E
C04687E314_mouse_eyeball_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Eyeball	H&E
B04372C211_mouse_ovary_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Ovary	H&E
C03937C4_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Brain	DAPI + 2 IF images (SMI32, NeuN)
B04652F6_mouse_testis_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.3	≥ SAW 8.1	Mouse	Healthy	Testis	DAPI + 1 IF images (TESK2)

Stereo-CITE T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
A02677B5_mouse_thymus_Stereo-CITE	1 cm x 1 cm	Stereo-CITE T FF V1.0	≥ SAW 8.1 & SAW 7.1	Mouse	Healthy	Thymus	DAPI
C04776D6_mouse_spleen_Stereo-CITE	1 cm x 1 cm	Stereo-CITE T FF V1.1	≥ SAW 8.1	Mouse	Healthy	Spleen	DAPI

Stereo-seq N Formalin Fixed & Paraffin Embedded (FFPE)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
C04144D5_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	ssDNA
C04138G3_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E
C04495G4_mouse_lung_microorganism_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Infected with Mycobacterium tuberculosis	Lung	H&E
C04496D6_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E