Datasets

Jump to the page of demo datasets for more exploration. Original input files and analysis results can be obtained there.

Kit version records the input information of the SAW count --kit-version argument.

Stereo-seq T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
SS200000135TL_D1_mouse_brain_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 5.5	Mouse	Healthy	Brain	ssDNA
FP200009107_E414_mouse_olfactory_bulb_Stereo-seq_T_FF	0.5 cm x 0.5 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Mouse	Healthy	Olfactory bulb	DAPI
B01207E3G4_rat_brain_Stereo-seq_T_FF	2 cm x 3 cm	Stereo-seq T FF V1.2	≥ SAW 6.1	Rat	Healthy	Brain	ssDNA
C02533C1_mouse_kidney_Stereo-seq_T_FF	1 cm x 1 cm	Stereo-seq T FF V1.2	≥ SAW 7.0	Mouse	Healthy	Kidney	H&E

Stereo-CITE T Fresh Frozen (FF)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
A02677B5_mouse_thymus_Stereo-CITE	1 cm x 1 cm	Stereo-CITE T FF V1.0	SAW 7.1	Mouse	Healthy	Thymus	DAPI

Stereo-seq N Formalin Fixed & Paraffin Embedded (FFPE)

Dataset	Chip size	Kit version	Pipeline version	Species	Disease state	Anatomical tissue	Staining method
C04144D5_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	ssDNA
C04138G3_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E
C04496D6_mouse_brain_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Healthy	Brain	H&E
C04495G4_mouse_lung_microorganism_Stereo-seq_N_FFPE	1 cm x 1 cm	Stereo-seq N FFPE V1.0	≥ SAW 8.0	Mouse	Infected with Mycobacterium tuberculosis	Lung	H&E